Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1673
ChIP-seq
1387
total RNA-seq
477
ATAC-seq
367
single cell RNA-seq
211
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
52
pCHi-C
30
Hi-C
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
367
Transcription
Target of assay
3
control
Date released
107
August, 2021
102
February, 2021
49
April, 2018
48
July, 2018
47
September, 2023
40
September, 2020
34
May, 2022
9
April, 2020
3
August, 2018
3
December, 2019
3
July, 2019
3
June, 2018
3
May, 2023
1
February, 2023
1
November, 2018
1
September, 2018
Available data
211
tsv
134
fastq
106
bam
106
bigWig
97
txt
52
zippedFastqFolder
8
csv
Organism
453
Homo sapiens
Biosample type
267
tissue
187
primary cell
in vitro differentiated cells
Organ
93
heart
84
bone element
80
pancreas
71
epithelium
66
kidney
9
lung
6
blood vessel
6
vasculature
5
connective tissue
3
brain
2
artery
1
adipose tissue
1
liver
1
musculature of body
Project
313
AMP
85
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
106
GRCh38
106
hg19
Lab
302
AMP-T2D consortium
85
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
91
inconsistent ontology term
7
audit script error
assay_title!
RRBS
biosample_type!
in vitro differentiated cells
organ_slims!
skeleton
BIOSAMPLE
ASSAY
454 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
RNA microarray
tissue
bone element
84
kidney
64
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
+ See 18 more…
primary cell
Langerhans cell
85
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
+ See 14 more…
See all biosamples
Download