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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1871
ChIP-seq
1407
total RNA-seq
531
ATAC-seq
321
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
56
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
whole genome sequencing assay
Assay category
321
Transcription
Target of assay
3
control
Date released
107
August, 2021
102
February, 2021
49
April, 2018
July, 2018
47
September, 2023
40
September, 2020
34
May, 2022
9
April, 2020
5
December, 2019
3
August, 2018
3
July, 2019
3
June, 2018
3
May, 2023
1
February, 2023
1
November, 2018
1
September, 2018
Available data
165
tsv
97
txt
86
fastq
58
bam
58
bigWig
52
zippedFastqFolder
8
csv
Organism
407
Homo sapiens
Biosample type
267
tissue
139
primary cell
2
in vitro differentiated cells
Organ
93
heart
84
bone element
66
kidney
43
pancreas
38
epithelium
9
lung
6
blood vessel
6
vasculature
3
brain
3
connective tissue
2
artery
1
adipose tissue
1
liver
1
musculature of body
Project
267
AMP
85
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
58
GRCh38
58
hg19
Lab
256
AMP-T2D consortium
85
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
87
inconsistent ontology term
9
audit script error
assay_title!
whole genome sequencing assay
month_released!
July, 2018
organ_slims!
stomach
BIOSAMPLE
ASSAY
408 results
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single cell RNA-seq
RNA microarray
tissue
bone element
84
kidney
64
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
+ See 18 more…
primary cell
Langerhans cell
85
pancreatic acinar cell
7
pancreatic delta cell
7
pancreatic ductal cell
7
pancreatic cell
6
+ See 9 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
See all biosamples
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