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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1653
ChIP-seq
1110
total RNA-seq
359
ATAC-seq
255
single cell RNA-seq
204
DNase-seq
87
RNA microarray
56
pCHi-C
51
snATAC-seq
25
Hi-C
24
WGBS
19
RRBS
16
small RNA-seq
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
255
Transcription
Target of assay
3
control
Date released
107
August, 2021
105
February, 2021
47
September, 2023
40
September, 2020
May, 2022
11
July, 2018
10
April, 2018
9
April, 2020
5
December, 2019
3
July, 2019
3
May, 2023
2
June, 2018
1
February, 2023
1
November, 2018
1
September, 2018
Available data
136
tsv
97
txt
59
fastq
26
bam
26
bigWig
19
zippedFastqFolder
8
csv
Organism
344
Homo sapiens
Biosample type
263
tissue
80
primary cell
2
in vitro differentiated cells
Organ
93
heart
84
bone element
pancreas
71
epithelium
69
kidney
9
lung
6
blood vessel
6
vasculature
5
connective tissue
3
brain
2
artery
1
adipose tissue
1
liver
Project
237
AMP
52
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
26
GRCh38
26
hg19
Lab
226
AMP-T2D consortium
52
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
88
inconsistent ontology term
9
audit script error
month_released!
May, 2022
organ_slims!
pancreas
BIOSAMPLE
ASSAY
345 results
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single cell RNA-seq
RNA microarray
snDrop-seq
tissue
bone element
84
kidney
64
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
+ See 19 more…
primary cell
Langerhans cell
52
pancreatic cell
9
mesenchymal cell
6
cerebellar granule cell
2
endothelial cell
2
+ See 5 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
See all biosamples
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