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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
907
ChIP-seq
ATAC-seq
180
single cell RNA-seq
178
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1211
Transcription
Date released
534
February, 2021
157
August, 2021
143
May, 2020
120
July, 2018
89
August, 2017
47
September, 2023
39
May, 2021
31
July, 2019
27
May, 2022
25
February, 2020
22
October, 2019
19
November, 2019
14
February, 2023
9
April, 2020
9
March, 2020
6
April, 2018
4
May, 2023
3
December, 2019
Available data
1036
tsv
907
bam
901
bigWig
156
txt
103
fastq
6
csv
Organism
1297
Homo sapiens
Biosample type
1298
tissue
434
primary cell
138
in vitro differentiated cells
113
cell line
Organ
456
connective tissue
398
adipose tissue
289
pancreas
171
liver
146
bone element
116
kidney
108
heart
19
eye
17
brain
13
blood vessel
13
vasculature
9
lung
7
limb
6
musculature of body
5
nerve
4
artery
4
skeleton
3
epithelium
1
spinal cord
Project
1235
AMP
47
KPMP
9
LungMap
7
T1D
Genome assembly (visualization)
902
GRCh38
902
hg19
Lab
1149
AMP-T2D consortium
60
Katalin Susztak, Upenn
47
KPMP
20
Karen Mohlke, UNC
12
Kyle Gaulton, UCSD
9
Xin Sun, UCSD
1
Bing Ren, UCSD
Audit category:
85
inconsistent ontology term
7
audit script error
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
1298 results
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total RNA-seq
single cell RNA-seq
RNA microarray
tissue
adipose tissue
382
islet of Langerhans
292
6
liver
167
1
kidney
49
64
bone element
84
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