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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1574
ChIP-seq
1330
total RNA-seq
443
ATAC-seq
361
single cell RNA-seq
202
DNase-seq
87
RNA microarray
84
snATAC-seq
73
WGBS
51
pCHi-C
25
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
STARR-seq
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
361
Transcription
1
DNA sequencing
Target of assay
3
control
Date released
102
August, 2021
102
February, 2021
49
April, 2018
48
July, 2018
47
September, 2023
40
September, 2020
34
May, 2022
9
April, 2020
3
August, 2018
3
December, 2019
3
July, 2019
3
June, 2018
3
May, 2023
1
February, 2023
1
November, 2018
1
September, 2018
Available data
205
tsv
134
fastq
106
bam
106
bigWig
97
txt
52
zippedFastqFolder
8
csv
1
vcf
Organism
448
Homo sapiens
Biosample type
261
tissue
187
primary cell
in vitro differentiated cells
1
cell line
Organ
93
heart
84
bone element
80
pancreas
71
epithelium
66
kidney
9
lung
blood vessel
6
vasculature
5
connective tissue
3
brain
2
artery
2
liver
1
adipose tissue
1
musculature of body
Project
308
AMP
85
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
106
GRCh38
106
hg19
Lab
296
AMP-T2D consortium
85
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
1
Bing Ren, UCSD
Audit category:
91
inconsistent ontology term
7
audit script error
biosample_type!
in vitro differentiated cells
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
449 results
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single cell RNA-seq
RNA microarray
whole genome sequencing assay
tissue
bone element
84
kidney
64
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
+ See 16 more…
primary cell
Langerhans cell
85
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
+ See 14 more…
cell line
HepG2
1
See all biosamples
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