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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1592
ChIP-seq
1254
total RNA-seq
293
ATAC-seq
181
DNase-seq
181
single cell RNA-seq
87
RNA microarray
40
pCHi-C
28
WGBS
27
snATAC-seq
24
Hi-C
16
small RNA-seq
11
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
181
Transcription
Date released
107
August, 2021
90
February, 2021
47
September, 2023
9
April, 2020
6
April, 2018
5
December, 2019
3
May, 2023
1
February, 2023
May, 2022
Available data
113
tsv
97
txt
6
bam
6
bigWig
6
csv
6
fastq
Organism
267
Homo sapiens
Biosample type
266
tissue
primary cell
2
in vitro differentiated cells
Organ
93
heart
84
bone element
66
kidney
9
lung
6
blood vessel
6
pancreas
6
vasculature
2
artery
1
adipose tissue
1
connective tissue
1
epithelium
1
liver
Project
212
AMP
47
KPMP
9
LungMap
Genome assembly (visualization)
6
GRCh38
6
hg19
Lab
201
AMP-T2D consortium
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
86
inconsistent ontology term
9
audit script error
biosample_type!
primary cell
month_released!
May, 2022
BIOSAMPLE
ASSAY
268 results
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single cell RNA-seq
RNA microarray
tissue
bone element
84
kidney
64
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
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in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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