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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
477
ChIP-seq
395
ATAC-seq
263
single cell RNA-seq
249
total RNA-seq
87
RNA microarray
84
snATAC-seq
58
WGBS
57
pCHi-C
29
Hi-C
21
RRBS
10
MeRIP-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
263
Transcription
Date released
107
August, 2021
102
February, 2021
47
September, 2023
40
September, 2020
34
May, 2022
9
April, 2020
5
December, 2019
3
May, 2023
1
February, 2023
1
November, 2018
1
September, 2018
Available data
213
tsv
134
fastq
106
bam
bigWig
97
txt
52
zippedFastqFolder
8
csv
Organism
349
Homo sapiens
Biosample type
261
tissue
87
primary cell
2
in vitro differentiated cells
Organ
93
heart
84
bone element
66
kidney
9
lung
6
blood vessel
6
vasculature
2
artery
1
adipose tissue
1
connective tissue
1
epithelium
1
liver
1
musculature of body
Project
209
AMP
85
HPAP
47
KPMP
9
LungMap
Lab
198
AMP-T2D consortium
85
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
86
inconsistent ontology term
9
audit script error
files.file_type!
bigWig
month_released!
January, 2019
BIOSAMPLE
ASSAY
350 results
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single cell RNA-seq
RNA microarray
tissue
bone element
84
kidney
64
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
+ See 17 more…
primary cell
Langerhans cell
85
pancreatic cell
2
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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