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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1840
ChIP-seq
1522
total RNA-seq
492
ATAC-seq
314
single cell RNA-seq
85
RNA microarray
63
snATAC-seq
57
pCHi-C
34
Hi-C
34
WGBS
25
DNase-seq
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
314
Transcription
Target of assay
3
control
Date released
107
August, 2021
102
February, 2021
49
April, 2018
48
July, 2018
47
September, 2023
21
September, 2020
9
April, 2020
December, 2019
3
August, 2018
3
July, 2019
3
June, 2018
3
May, 2023
1
February, 2023
1
May, 2022
1
November, 2018
1
September, 2018
Available data
209
tsv
134
fastq
106
bam
106
bigWig
97
txt
zippedFastqFolder
8
csv
Organism
398
Homo sapiens
Biosample type
264
tissue
135
primary cell
Organ
93
heart
84
bone element
80
pancreas
70
epithelium
63
kidney
9
lung
6
blood vessel
6
vasculature
5
connective tissue
3
brain
2
artery
1
adipose tissue
1
liver
1
musculature of body
Project
310
AMP
47
KPMP
33
HPAP
9
LungMap
Genome assembly (visualization)
106
GRCh38
106
hg19
Lab
299
AMP-T2D consortium
47
KPMP
33
Klaus Kaestner, Upenn
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
91
inconsistent ontology term
5
audit script error
files.file_type!
zippedFastqFolder
month_released!
December, 2019
June, 2019
BIOSAMPLE
ASSAY
399 results
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single cell RNA-seq
RNA microarray
tissue
bone element
84
kidney
63
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
+ See 16 more…
primary cell
Langerhans cell
33
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
+ See 14 more…
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