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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1592
ChIP-seq
1280
total RNA-seq
331
ATAC-seq
182
single cell RNA-seq
181
DNase-seq
87
RNA microarray
38
pCHi-C
28
WGBS
28
snATAC-seq
24
Hi-C
16
small RNA-seq
11
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
16
Transcription
Date released
84
February, 2021
16
July, 2019
2
December, 2019
1
August, 2021
Available data
84
txt
18
tsv
16
bam
16
bigWig
Organism
102
Homo sapiens
Biosample type
103
tissue
primary cell
Organ
84
bone element
4
brain
3
adipose tissue
3
connective tissue
3
kidney
3
liver
2
pancreas
1
epithelium
1
heart
1
musculature of body
Project
103
AMP
Genome assembly (visualization)
16
GRCh38
16
hg19
Lab
103
AMP-T2D consortium
Audit category:
84
inconsistent ontology term
2
audit script error
biosample_type!
primary cell
organ_slims!
thymus
BIOSAMPLE
ASSAY
103 results
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RNA microarray
small RNA-seq
tissue
bone element
84
body of pancreas
2
right lobe of liver
2
subcutaneous adipose tissue
1
1
cerebellum (Hemisphere)
1
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