Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1790
ChIP-seq
970
total RNA-seq
503
ATAC-seq
351
single cell RNA-seq
210
DNase-seq
63
WGBS
57
snATAC-seq
53
pCHi-C
34
Hi-C
21
RRBS
15
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
RNA microarray
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
whole genome sequencing assay
Assay category
57
DNA accessibility
Date released
February, 2021
22
May, 2022
16
January, 2021
10
April, 2020
6
August, 2021
2
December, 2019
2
February, 2023
1
August, 2022
Available data
21
zippedFastqFolder
2
tsv
1
bed bed3+
1
txt
Organism
58
Homo sapiens
Biosample type
30
tissue
29
primary cell
Organ
11
pancreas
10
lung
8
blood
8
bodily fluid
8
kidney
adipose tissue
1
connective tissue
1
epithelium
1
musculature of body
Project
21
HPAP
18
T1D
10
AMP
10
LungMap
Genome assembly (visualization)
1
hg19
Lab
21
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
4
AMP-T2D consortium
Audit category:
4
audit script error
assay_title!
whole genome sequencing assay
month_released!
February, 2021
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
59 results
search-icon
table-tab-icon
Clear Filters
snATAC-seq
RNA microarray
tissue
lung
10
islet of Langerhans
7
kidney
6
pancreas
4
kidney interstitium
1
+ See 2 more…
primary cell
Langerhans cell
21
peripheral blood mononuclear cell
8
See all biosamples
Download