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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1784
ChIP-seq
1467
total RNA-seq
456
ATAC-seq
305
single cell RNA-seq
84
RNA microarray
77
snATAC-seq
75
WGBS
55
pCHi-C
33
Hi-C
22
DNase-seq
17
RRBS
17
small RNA-seq
10
MeRIP-seq
5
GRO-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
2
HiChIP
1
DNAme array
1
whole genome sequencing assay
Assay category
77
DNA accessibility
Date released
111
February, 2021
22
May, 2022
16
January, 2021
9
April, 2020
2
February, 2023
1
August, 2022
Available data
85
txt
27
fastq
21
zippedFastqFolder
1
bed bed3+
Organism
161
Homo sapiens
Biosample type
105
tissue
56
primary cell
Organ
84
bone element
11
pancreas
9
lung
8
blood
8
bodily fluid
kidney
1
epithelium
1
musculature of body
Project
86
AMP
48
HPAP
18
T1D
9
LungMap
Genome assembly (visualization)
1
hg19
Lab
86
AMP-T2D consortium
48
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
9
Xin Sun, UCSD
Audit category:
84
inconsistent ontology term
29
audit script error
month_released!
June, 2019
organ_slims!
kidney
BIOSAMPLE
ASSAY
161 results
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Clear Filters
RNA microarray
snATAC-seq
tissue
bone element
84
lung
9
islet of Langerhans
7
pancreas
4
skeletal muscle tissue
1
primary cell
Langerhans cell
48
peripheral blood mononuclear cell
8
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