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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1700
ChIP-seq
1390
total RNA-seq
427
ATAC-seq
298
single cell RNA-seq
DNase-seq
86
RNA microarray
83
snATAC-seq
56
pCHi-C
27
WGBS
19
Hi-C
16
small RNA-seq
10
RRBS
5
GRO-seq
5
STARR-seq
4
FAIRE-seq
4
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
10
DNA methylation
Date released
8
July, 2019
2
August, 2017
Available data
10
bed bedMethyl
10
bigBed bedMethyl
2
fastq
Organism
10
Homo sapiens
Biosample type
7
tissue
3
primary cell
Organ
epithelium
musculature of body
4
kidney
2
brain
2
heart
2
liver
2
pancreas
1
connective tissue
1
eye
1
pericardium
1
vasculature
Project
10
AMP
Genome assembly (visualization)
10
hg19
Lab
10
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
DNase-seq
audit.WARNING.category!
inconsistent assembly
organ_slims!
epithelium
musculature of body
BIOSAMPLE
ASSAY
10 results
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RRBS
tissue
brain
1
heart left ventricle
1
islet of Langerhans
1
kidney
1
liver
1
+ See 2 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
skeletal muscle myoblast
1
See all biosamples
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