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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
878
ChIP-seq
496
total RNA-seq
271
ATAC-seq
189
single cell RNA-seq
56
snATAC-seq
48
WGBS
34
DNase-seq
32
pCHi-C
18
Hi-C
10
RRBS
6
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
small RNA-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
FAIRE-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
58
DNA methylation
Date released
41
May, 2022
9
July, 2019
6
February, 2021
1
August, 2017
1
November, 2018
Available data
41
zippedFastqFolder
11
bed bedMethyl
11
bigBed bedMethyl
8
fastq
6
tsv
1
bam
1
bigWig
Organism
58
Homo sapiens
Biosample type
57
primary cell
tissue
1
cell line
Organ
53
epithelium
47
pancreas
3
kidney
2
liver
1
brain
1
connective tissue
1
eye
1
heart
1
musculature of body
1
vasculature
Project
47
HPAP
11
AMP
Genome assembly (visualization)
10
hg19
1
GRCh38
Lab
47
Klaus Kaestner, Upenn
11
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
biosample_type!
tissue
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
58 results
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WGBS
RRBS
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
+ See 7 more…
cell line
HepG2
1
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