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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1801
ChIP-seq
1456
total RNA-seq
455
ATAC-seq
305
single cell RNA-seq
131
DNase-seq
85
RNA microarray
78
snATAC-seq
75
WGBS
55
pCHi-C
30
Hi-C
17
RRBS
17
small RNA-seq
10
MeRIP-seq
5
GRO-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
92
DNA methylation
Date released
41
May, 2022
23
July, 2019
15
August, 2017
7
November, 2018
6
February, 2021
Available data
41
zippedFastqFolder
32
bed bedMethyl
32
bigBed bedMethyl
21
fastq
18
bam
17
bigWig
6
tsv
Organism
92
Homo sapiens
Biosample type
54
primary cell
37
tissue
1
cell line
Organ
53
epithelium
53
pancreas
10
heart
7
connective tissue
7
liver
6
adipose tissue
6
musculature of body
kidney
3
vasculature
2
blood vessel
2
brain
2
spleen
1
eye
1
limb
1
pericardium
Project
47
HPAP
45
AMP
Genome assembly (visualization)
17
GRCh38
15
hg19
Lab
47
Klaus Kaestner, Upenn
45
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
lab.title!
Bing Ren, UCSD
month_released!
May, 2023
organ_slims!
kidney
BIOSAMPLE
ASSAY
92 results
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Clear Filters
WGBS
RRBS
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
+ See 4 more…
tissue
heart left ventricle
4
1
liver
3
1
skeletal muscle tissue
4
adipose tissue
3
pancreas
2
1
+ See 12 more…
cell line
HepG2
1
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