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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1871
ChIP-seq
1483
total RNA-seq
525
ATAC-seq
366
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
63
WGBS
57
pCHi-C
26
Hi-C
10
MeRIP-seq
6
RRBS
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
69
DNA methylation
Date released
41
May, 2022
July, 2019
15
August, 2017
7
November, 2018
6
February, 2021
Available data
41
zippedFastqFolder
21
fastq
13
bed bedMethyl
13
bigBed bedMethyl
9
bam
9
bigWig
6
tsv
Organism
69
Homo sapiens
Biosample type
48
primary cell
20
tissue
1
cell line
Organ
51
pancreas
47
epithelium
6
adipose tissue
6
connective tissue
5
liver
4
musculature of body
2
spleen
Project
47
HPAP
22
AMP
Genome assembly (visualization)
9
GRCh38
4
hg19
Lab
47
Klaus Kaestner, Upenn
22
AMP-T2D consortium
month_released!
July, 2019
BIOSAMPLE
ASSAY
69 results
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WGBS
RRBS
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
skeletal muscle myoblast
1
tissue
liver
3
1
skeletal muscle tissue
4
adipose tissue
3
subcutaneous abdominal adipose tissue
3
body of pancreas
2
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cell line
HepG2
1
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