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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
116
ATAC-seq
97
total RNA-seq
87
single cell RNA-seq
56
snATAC-seq
47
WGBS
37
ChIP-seq
16
pCHi-C
10
Hi-C
10
RRBS
2
DNase-seq
1
DNAme array
Assay category
10
DNA methylation
Date released
16
May, 2021
9
July, 2019
1
August, 2017
Available data
10
bed bedMethyl
10
bigBed bedMethyl
bam
1
bed bed3+
1
fastq
Organism
26
Homo sapiens
Biosample type
36
tissue
26
primary cell
6
cell line
5
in vitro differentiated cells
4
stem cell
Organ
6
epithelium
3
kidney
2
connective tissue
1
bone element
1
bone marrow
1
brain
1
eye
1
heart
1
liver
1
musculature of body
1
vasculature
Project
16
T1D
10
AMP
Genome assembly (visualization)
10
hg19
Lab
16
Kyle Gaulton, UCSD
10
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
assay_title!
CRISPR RNA-seq
files.file_type!
bam
BIOSAMPLE
ASSAY
26 results
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pCHi-C
RRBS
primary cell
CD4-positive, alpha-beta T cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
activated CD4-positive, alpha-beta T cell
1
adult endothelial progenitor cell
1
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