Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1871
ChIP-seq
1468
total RNA-seq
528
ATAC-seq
354
single cell RNA-seq
212
DNase-seq
75
WGBS
57
pCHi-C
55
snATAC-seq
30
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
RNA microarray
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
354
Transcription
21
DNA methylation
Target of assay
3
control
Date released
98
August, 2021
49
April, 2018
48
July, 2018
47
September, 2023
40
September, 2020
34
May, 2022
18
July, 2019
13
February, 2021
9
April, 2020
6
August, 2017
3
August, 2018
3
June, 2018
3
May, 2023
1
December, 2019
1
February, 2023
1
November, 2018
1
September, 2018
Available data
204
tsv
138
fastq
106
bam
106
bigWig
52
zippedFastqFolder
19
bed bedMethyl
19
bigBed bedMethyl
txt
3
csv
Organism
375
Homo sapiens
Biosample type
197
primary cell
178
tissue
Organ
95
heart
82
pancreas
76
epithelium
55
kidney
9
lung
7
vasculature
6
blood vessel
6
musculature of body
5
brain
5
connective tissue
3
liver
2
artery
1
eye
1
pericardium
Project
234
AMP
85
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
125
hg19
106
GRCh38
Lab
231
AMP-T2D consortium
85
Klaus Kaestner, Upenn
47
KPMP
9
Xin Sun, UCSD
3
Katalin Susztak, Upenn
Audit category:
11
inconsistent ontology term
audit script error
assay_title!
STARR-seq
audit.ERROR.category!
audit script error
files.file_type!
txt
BIOSAMPLE
ASSAY
375 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
RRBS
primary cell
Langerhans cell
85
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
+ See 24 more…
tissue
kidney
51
1
heart left ventricle
18
1
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 17 more…
See all biosamples
Download