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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
901
ChIP-seq
260
ATAC-seq
180
single cell RNA-seq
178
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
196
Transcription
11
DNA methylation
Date released
106
August, 2021
47
September, 2023
22
July, 2019
9
April, 2020
6
April, 2018
6
February, 2021
5
August, 2017
3
May, 2023
1
December, 2019
1
February, 2023
1
May, 2022
Available data
125
tsv
22
bam
22
bigWig
13
txt
9
bed bedMethyl
9
bigBed bedMethyl
9
fastq
6
csv
Organism
207
Homo sapiens
Biosample type
207
tissue
199
primary cell
2
in vitro differentiated cells
Organ
95
heart
66
kidney
10
pancreas
9
lung
6
blood vessel
6
musculature of body
6
vasculature
5
brain
5
liver
2
adipose tissue
2
artery
2
connective tissue
1
pericardium
Project
151
AMP
47
KPMP
9
LungMap
Genome assembly (visualization)
31
hg19
22
GRCh38
Lab
140
AMP-T2D consortium
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
5
audit script error
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
207 results
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single cell RNA-seq
small RNA-seq
RRBS
tissue
kidney
64
1
heart left ventricle
18
1
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
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