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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1653
ChIP-seq
1130
total RNA-seq
379
ATAC-seq
289
single cell RNA-seq
204
DNase-seq
87
RNA microarray
73
snATAC-seq
56
pCHi-C
25
Hi-C
24
WGBS
19
RRBS
16
small RNA-seq
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
19
DNA methylation
16
Transcription
Date released
29
July, 2019
6
August, 2017
Available data
17
bed bedMethyl
17
bigBed bedMethyl
16
bam
16
bigWig
16
tsv
4
fastq
Organism
35
Homo sapiens
Biosample type
23
tissue
12
primary cell
Organ
7
musculature of body
6
brain
6
epithelium
5
kidney
5
liver
4
connective tissue
pancreas
3
adipose tissue
3
heart
1
eye
1
pericardium
1
vasculature
Project
35
AMP
Genome assembly (visualization)
33
hg19
16
GRCh38
Lab
35
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
assay_title!
GRO-seq
organ_slims!
pancreas
BIOSAMPLE
ASSAY
35 results
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RRBS
small RNA-seq
tissue
skeletal muscle tissue
4
1
liver
1
1
right lobe of liver
2
brain
1
cerebellum (Hemisphere)
1
+ See 12 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
+ See 7 more…
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