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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1519
ChIP-seq
1438
total RNA-seq
480
ATAC-seq
273
single cell RNA-seq
150
DNase-seq
RNA microarray
84
snATAC-seq
67
WGBS
52
pCHi-C
28
Hi-C
17
RRBS
13
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
17
DNA methylation
13
Transcription
Date released
24
July, 2019
6
August, 2017
Available data
15
bed bedMethyl
15
bigBed bedMethyl
13
bam
13
bigWig
13
tsv
4
fastq
Organism
30
Homo sapiens
Biosample type
20
tissue
10
primary cell
Organ
7
musculature of body
brain
6
epithelium
5
kidney
5
liver
4
connective tissue
4
pancreas
3
adipose tissue
heart
1
eye
1
pericardium
1
vasculature
Project
30
AMP
Genome assembly (visualization)
28
hg19
13
GRCh38
Lab
30
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
RNA microarray
organ_slims!
brain
heart
BIOSAMPLE
ASSAY
30 results
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RRBS
small RNA-seq
tissue
skeletal muscle tissue
4
1
body of pancreas
2
liver
1
1
right lobe of liver
2
islet of Langerhans
1
+ See 8 more…
primary cell
cardiac muscle cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
kidney epithelial cell
1
mesenchymal stem cell of adipose
1
+ See 5 more…
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