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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1129
total RNA-seq
813
ChIP-seq
525
ATAC-seq
369
single cell RNA-seq
210
DNase-seq
86
RNA microarray
84
snATAC-seq
69
WGBS
55
pCHi-C
34
Hi-C
21
RRBS
15
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
21
DNA methylation
15
Transcription
Date released
30
July, 2019
6
August, 2017
Available data
19
bed bedMethyl
19
bigBed bedMethyl
15
bam
15
bigWig
15
tsv
4
fastq
Organism
36
Homo sapiens
Biosample type
25
tissue
11
primary cell
Organ
7
musculature of body
6
brain
6
epithelium
5
kidney
5
liver
4
connective tissue
4
pancreas
adipose tissue
3
heart
1
eye
1
pericardium
1
vasculature
Project
36
AMP
Genome assembly (visualization)
34
hg19
15
GRCh38
Lab
36
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
organ_slims!
adipose tissue
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
36 results
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RRBS
small RNA-seq
tissue
skeletal muscle tissue
4
1
body of pancreas
2
liver
1
1
right lobe of liver
2
brain
1
+ See 13 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
+ See 6 more…
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