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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
ATAC-seq
70
total RNA-seq
53
WGBS
37
single cell RNA-seq
22
snATAC-seq
18
small RNA-seq
15
RRBS
8
Hi-C
2
FAIRE-seq
Assay category
70
Transcription
22
DNA accessibility
15
DNA methylation
Date released
572
February, 2021
190
May, 2020
182
May, 2021
120
July, 2018
95
August, 2017
95
February, 2023
80
August, 2021
59
July, 2019
48
May, 2022
30
October, 2019
26
September, 2018
25
February, 2020
20
November, 2019
16
January, 2021
16
September, 2020
15
February, 2018
15
March, 2020
10
April, 2020
5
December, 2019
5
January, 2019
4
November, 2020
2
October, 2018
1
August, 2022
1
May, 2023
Available data
50
bam
44
bigWig
44
tsv
21
zippedFastqFolder
15
bed bedMethyl
15
bigBed bedMethyl
7
txt
6
fastq
1
bed bed3+
Organism
107
Homo sapiens
Biosample type
64
tissue
43
primary cell
Organ
25
liver
14
connective tissue
12
heart
11
epithelium
10
pancreas
9
adipose tissue
9
kidney
6
brain
6
vasculature
5
blood vessel
4
musculature of body
2
artery
2
pericardium
1
eye
Project
86
AMP
21
HPAP
Genome assembly (visualization)
60
hg19
44
GRCh38
Lab
60
AMP-T2D consortium
21
Klaus Kaestner, Upenn
20
Karen Mohlke, UNC
6
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
1
audit script error
BIOSAMPLE
ASSAY
107 results
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Clear Filters
total RNA-seq
snATAC-seq
RRBS
tissue
liver
22
islet of Langerhans
6
1
omental fat pad
4
subcutaneous adipose tissue
4
heart left ventricle
2
1
+ See 18 more…
primary cell
Langerhans cell
21
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
renal cortical epithelial cell
1
1
cardiac atrium fibroblast
1
+ See 15 more…
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