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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1783
ChIP-seq
1256
total RNA-seq
396
ATAC-seq
217
single cell RNA-seq
212
DNase-seq
87
RNA microarray
40
pCHi-C
29
Hi-C
28
WGBS
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
snDrop-seq
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
MPRA
1
whole genome sequencing assay
Assay category
21
DNA methylation
2
DNA accessibility
Date released
15
July, 2019
6
August, 2017
1
August, 2022
1
May, 2022
Available data
19
bed bedMethyl
19
bigBed bedMethyl
4
fastq
1
bed bed3+
1
txt
Organism
23
Homo sapiens
Biosample type
13
tissue
10
primary cell
Organ
6
epithelium
6
musculature of body
4
kidney
3
pancreas
2
brain
2
heart
2
liver
1
connective tissue
1
eye
1
pericardium
1
vasculature
Project
48
HPAP
23
AMP
18
T1D
10
LungMap
Genome assembly (visualization)
20
hg19
Lab
23
AMP-T2D consortium
Katalin Susztak, Upenn
Audit category:
2
audit script error
2
inconsistent ontology term
lab.title!
Katalin Susztak, Upenn
month_released!
February, 2020
BIOSAMPLE
ASSAY
23 results
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RRBS
snATAC-seq
tissue
skeletal muscle tissue
4
1
islet of Langerhans
1
1
brain
1
heart left ventricle
1
kidney
1
+ See 3 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
+ See 5 more…
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