Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1622
ChIP-seq
1527
total RNA-seq
531
ATAC-seq
369
single cell RNA-seq
201
DNase-seq
86
RNA microarray
83
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
18
small RNA-seq
17
RRBS
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
DNAme array
1
whole genome sequencing assay
Assay category
83
DNA accessibility
17
DNA methylation
Date released
27
February, 2021
22
May, 2022
16
January, 2021
15
July, 2019
9
April, 2020
6
August, 2021
2
August, 2017
2
February, 2023
1
August, 2022
Available data
27
fastq
21
zippedFastqFolder
15
bed bedMethyl
15
bigBed bedMethyl
1
bed bed3+
1
txt
Organism
100
Homo sapiens
Biosample type
65
primary cell
35
tissue
Organ
13
pancreas
10
kidney
9
lung
8
blood
8
bodily fluid
6
epithelium
4
musculature of body
2
brain
2
heart
1
connective tissue
1
eye
1
liver
1
pericardium
1
vasculature
Project
48
HPAP
25
AMP
18
T1D
9
LungMap
Genome assembly (visualization)
16
hg19
Lab
48
Klaus Kaestner, Upenn
19
AMP-T2D consortium
18
Kyle Gaulton, UCSD
9
Xin Sun, UCSD
6
Katalin Susztak, Upenn
Audit category:
29
audit script error
2
inconsistent ontology term
files.read_length!
36
BIOSAMPLE
ASSAY
100 results
search-icon
table-tab-icon
Clear Filters
snATAC-seq
RRBS
primary cell
Langerhans cell
48
peripheral blood mononuclear cell
8
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
+ See 6 more…
tissue
lung
9
islet of Langerhans
7
1
kidney
6
1
pancreas
4
1
skeletal muscle tissue
1
2
+ See 3 more…
See all biosamples
Download