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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1338
total RNA-seq
1315
ChIP-seq
508
ATAC-seq
359
single cell RNA-seq
206
DNase-seq
87
RNA microarray
74
snATAC-seq
70
WGBS
53
pCHi-C
30
Hi-C
19
RRBS
15
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
74
DNA accessibility
19
DNA methylation
Date released
27
February, 2021
22
May, 2022
16
January, 2021
14
July, 2019
April, 2020
6
August, 2021
5
August, 2017
2
February, 2023
1
August, 2022
Available data
30
fastq
21
zippedFastqFolder
17
bed bedMethyl
17
bigBed bedMethyl
1
bed bed3+
1
txt
Organism
93
Homo sapiens
Biosample type
65
primary cell
28
tissue
Organ
13
pancreas
10
kidney
8
blood
8
bodily fluid
6
epithelium
6
musculature of body
2
brain
2
heart
liver
1
connective tissue
1
eye
1
pericardium
1
vasculature
Project
48
HPAP
27
AMP
18
T1D
Genome assembly (visualization)
18
hg19
Lab
48
Klaus Kaestner, Upenn
21
AMP-T2D consortium
18
Kyle Gaulton, UCSD
6
Katalin Susztak, Upenn
Audit category:
29
audit script error
2
inconsistent ontology term
month_released!
April, 2020
organ_slims!
gonad
liver
BIOSAMPLE
ASSAY
93 results
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snATAC-seq
RRBS
primary cell
Langerhans cell
48
peripheral blood mononuclear cell
8
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
+ See 6 more…
tissue
islet of Langerhans
7
1
kidney
6
1
pancreas
4
1
skeletal muscle tissue
1
4
brain
1
+ See 2 more…
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