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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1673
ChIP-seq
1391
total RNA-seq
489
ATAC-seq
364
single cell RNA-seq
211
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
51
pCHi-C
30
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
1391
Transcription
21
DNA methylation
Date released
523
February, 2021
190
May, 2020
120
July, 2018
98
May, 2021
95
August, 2017
89
February, 2023
67
August, 2021
59
July, 2019
28
October, 2019
26
May, 2022
26
September, 2018
25
February, 2020
20
November, 2019
16
September, 2020
13
March, 2020
5
December, 2019
5
January, 2019
4
November, 2020
2
October, 2018
1
May, 2023
Available data
1188
tsv
1155
bam
1151
bigWig
226
fastq
59
txt
19
bed bedMethyl
19
bigBed bedMethyl
2
bed bed3+
Organism
1412
Homo sapiens
Biosample type
1042
tissue
257
primary cell
in vitro differentiated cells
113
cell line
Organ
466
connective tissue
399
pancreas
398
adipose tissue
191
liver
135
epithelium
73
heart
64
kidney
62
bone element
62
vasculature
61
blood vessel
56
artery
20
eye
19
brain
11
musculature of body
8
embryo
7
limb
5
nerve
4
skeleton
2
pericardium
1
spinal cord
Project
1215
AMP
105
T1D
92
HPAP
Genome assembly (visualization)
1171
hg19
1150
GRCh38
Lab
1131
AMP-T2D consortium
110
Kyle Gaulton, UCSD
92
Klaus Kaestner, Upenn
49
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
10
Bing Ren, UCSD
Audit category:
43
inconsistent ontology term
biosample_type!
in vitro differentiated cells
month_released!
June, 2018
organ_slims!
urinary bladder
BIOSAMPLE
ASSAY
1412 results
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Clear Filters
total RNA-seq
RRBS
tissue
adipose tissue
382
islet of Langerhans
292
1
liver
167
1
bone tissue
58
kidney
49
1
+ See 48 more…
primary cell
monocyte
54
pancreatic alpha cell
52
exocrine cell
39
pancreatic beta cell
21
hepatocyte
5
1
+ See 50 more…
cell line
smooth muscle cell of the coronary artery
52
EndoC_BH1
33
HepG2
14
H1-hESC
8
early embryonic cell
2
+ See 4 more…
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