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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
ChIP-seq
102
ATAC-seq
53
total RNA-seq
41
WGBS
19
DNase-seq
8
Hi-C
6
MeRIP-seq
6
RRBS
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
Assay category
53
Transcription
6
DNA methylation
Date released
37
February, 2023
16
September, 2020
6
July, 2019
Available data
81
fastq
tsv
76
bam
76
bigWig
6
bed bedMethyl
6
bigBed bedMethyl
Organism
59
Homo sapiens
Biosample type
59
primary cell
Organ
73
pancreas
59
epithelium
53
kidney
22
liver
15
eye
6
connective tissue
5
musculature of body
4
bone element
4
skeleton
2
brain
2
heart
1
adipose tissue
1
pericardium
1
vasculature
Project
53
HPAP
6
AMP
Genome assembly (visualization)
6
hg19
Lab
53
Klaus Kaestner, Upenn
6
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
tsv
organ_slims!
spleen
BIOSAMPLE
ASSAY
59 results
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total RNA-seq
RRBS
primary cell
pancreatic alpha cell
42
pancreatic beta cell
11
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
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