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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
DNase-seq
56
ChIP-seq
11
total RNA-seq
6
single cell RNA-seq
4
RRBS
3
pCHi-C
3
snDrop-seq
2
RNA microarray
1
FAIRE-seq
1
small RNA-seq
Assay category
11
Transcription
4
DNA methylation
Date released
9
July, 2019
6
October, 2019
Available data
11
bam
11
bigWig
11
tsv
4
bed bedMethyl
4
bigBed bedMethyl
Organism
15
Homo sapiens
Biosample type
9
primary cell
4
cell line
2
tissue
Organ
475
connective tissue
398
adipose tissue
333
pancreas
162
liver
84
epithelium
74
heart
62
bone element
62
vasculature
61
blood vessel
56
artery
20
eye
19
brain
15
kidney
14
embryo
11
musculature of body
7
limb
5
nerve
4
skeleton
2
pericardium
1
spinal cord
0
ovary
Project
15
AMP
Genome assembly (visualization)
15
hg19
11
GRCh38
Lab
49
Katalin Susztak, Upenn
15
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
BIOSAMPLE
ASSAY
15 results
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total RNA-seq
RRBS
primary cell
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
renal cortical epithelial cell
1
1
glomerular endothelial cell
1
kidney glomerular epithelial cell
1
+ See 1 more…
cell line
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
glomerular visceral epithelial cell
1
tissue
kidney
1
metanephros
1
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