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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1397
total RNA-seq
828
ChIP-seq
485
ATAC-seq
360
single cell RNA-seq
208
DNase-seq
84
snATAC-seq
75
WGBS
48
pCHi-C
28
Hi-C
19
RRBS
18
small RNA-seq
5
FAIRE-seq
5
GRO-seq
4
MeRIP-seq
4
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
RNA microarray
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
19
DNA methylation
Date released
13
July, 2019
6
August, 2017
Available data
17
bed bedMethyl
17
bigBed bedMethyl
4
fastq
Organism
19
Homo sapiens
Biosample type
11
tissue
8
primary cell
Organ
5
epithelium
5
musculature of body
3
kidney
2
brain
2
liver
2
pancreas
1
eye
1
heart
1
pericardium
1
vasculature
Project
19
AMP
Genome assembly (visualization)
17
hg19
Lab
19
AMP-T2D consortium
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
month_released!
March, 2019
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
19 results
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RRBS
tissue
skeletal muscle tissue
4
brain
1
heart left ventricle
1
islet of Langerhans
1
kidney
1
+ See 3 more…
primary cell
cardiac muscle cell
1
choroid plexus epithelial cell
1
hepatocyte
1
kidney epithelial cell
1
renal cortical epithelial cell
1
+ See 3 more…
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