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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1396
total RNA-seq
667
ChIP-seq
423
ATAC-seq
296
single cell RNA-seq
86
RNA microarray
84
snATAC-seq
53
pCHi-C
28
WGBS
26
Hi-C
18
small RNA-seq
15
RRBS
5
STARR-seq
4
GRO-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
2
MeRIP-seq
1
DNAme array
1
DNase-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
15
DNA methylation
Date released
9
July, 2019
6
August, 2017
Available data
13
bed bedMethyl
13
bigBed bedMethyl
4
fastq
Organism
15
Homo sapiens
Biosample type
11
tissue
4
primary cell
Organ
epithelium
5
musculature of body
4
kidney
2
brain
2
heart
2
liver
2
pancreas
1
connective tissue
1
eye
1
pericardium
1
vasculature
Project
15
AMP
Genome assembly (visualization)
13
hg19
Lab
15
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
biosample_type!
stem cell
files.file_type!
bigBed narrowPeak
organ_slims!
epithelium
target.investigated_as!
control
BIOSAMPLE
ASSAY
15 results
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RRBS
tissue
skeletal muscle tissue
4
brain
1
heart left ventricle
1
islet of Langerhans
1
kidney
1
+ See 3 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
skeletal muscle cell
1
skeletal muscle myoblast
1
See all biosamples
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