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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
629
ChIP-seq
313
total RNA-seq
187
single cell RNA-seq
129
ATAC-seq
56
snATAC-seq
48
WGBS
33
DNase-seq
22
pCHi-C
14
Hi-C
10
RRBS
6
MeRIP-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
FAIRE-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
10
DNA methylation
Date released
9
July, 2019
1
August, 2017
Available data
10
bed bedMethyl
10
bigBed bedMethyl
1
fastq
Organism
10
Homo sapiens
Biosample type
11
tissue
10
primary cell
0
cell line
Organ
6
epithelium
3
kidney
1
brain
1
connective tissue
1
eye
1
heart
1
liver
1
musculature of body
1
vasculature
Project
10
AMP
Genome assembly (visualization)
10
hg19
Lab
10
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
month_released!
May, 2020
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
10 results
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RRBS
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
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