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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1580
ChIP-seq
1112
total RNA-seq
521
ATAC-seq
357
single cell RNA-seq
178
DNase-seq
86
RNA microarray
74
snATAC-seq
69
WGBS
52
pCHi-C
30
Hi-C
19
RRBS
11
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
19
DNA methylation
Date released
13
July, 2019
6
August, 2017
Available data
17
bed bedMethyl
17
bigBed bedMethyl
4
fastq
Organism
19
Homo sapiens
Biosample type
10
tissue
9
primary cell
Organ
6
epithelium
5
musculature of body
4
kidney
brain
2
heart
2
liver
2
pancreas
1
connective tissue
1
eye
1
pericardium
1
vasculature
Project
19
AMP
Genome assembly (visualization)
17
hg19
Lab
19
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
files.file_type!
bedpe
organ_slims!
adipose tissue
brain
lung
BIOSAMPLE
ASSAY
19 results
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RRBS
tissue
skeletal muscle tissue
4
heart left ventricle
1
islet of Langerhans
1
kidney
1
liver
1
+ See 2 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
kidney epithelial cell
1
+ See 4 more…
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