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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1071
total RNA-seq
651
ChIP-seq
371
ATAC-seq
230
single cell RNA-seq
87
RNA microarray
55
pCHi-C
46
snATAC-seq
24
Hi-C
17
WGBS
16
small RNA-seq
15
RRBS
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
15
DNA methylation
Date released
13
July, 2019
2
August, 2017
Available data
17
bed bedMethyl
17
bigBed bedMethyl
fastq
Organism
15
Homo sapiens
Biosample type
9
primary cell
6
tissue
Organ
6
epithelium
4
kidney
3
musculature of body
2
brain
2
heart
pancreas
1
connective tissue
1
eye
1
liver
1
pericardium
1
vasculature
Project
15
AMP
Genome assembly (visualization)
13
hg19
Lab
15
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
files.file_type!
bigBed narrowPeak
fastq
organ_slims!
pancreas
BIOSAMPLE
ASSAY
15 results
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RRBS
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
+ See 4 more…
tissue
skeletal muscle tissue
2
brain
1
heart left ventricle
1
kidney
1
pericardium
1
See all biosamples
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