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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1034
ChIP-seq
906
total RNA-seq
404
ATAC-seq
252
single cell RNA-seq
69
WGBS
53
pCHi-C
51
snATAC-seq
33
Hi-C
17
RRBS
17
small RNA-seq
10
MeRIP-seq
5
GRO-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
DNase-seq
1
MPRA
1
RNA microarray
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
17
DNA methylation
Date released
11
July, 2019
6
August, 2017
Available data
15
bed bedMethyl
15
bigBed bedMethyl
4
fastq
Organism
17
Homo sapiens
Biosample type
10
tissue
7
primary cell
Organ
6
epithelium
5
musculature of body
kidney
2
brain
2
heart
2
liver
2
pancreas
1
connective tissue
1
eye
1
pericardium
1
vasculature
Project
17
AMP
Genome assembly (visualization)
15
hg19
Lab
17
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bigBed narrowPeak
month_released!
February, 2021
September, 2020
organ_slims!
kidney
BIOSAMPLE
ASSAY
17 results
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RRBS
tissue
skeletal muscle tissue
4
brain
1
heart left ventricle
1
islet of Langerhans
1
liver
1
+ See 2 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
hepatocyte
1
retinal pigment epithelial cell
1
+ See 2 more…
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