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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1871ChIP-seq
  • 1526total RNA-seq
  • 531ATAC-seq
  • 369single cell RNA-seq
  • 212DNase-seq
  • 87RNA microarray
  • 85snATAC-seq
  • 75WGBS
  • 57pCHi-C
  • 34Hi-C
  • 20RRBS
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 20DNA methylation
Date released
  • 14July, 2019
  • 6August, 2017
Available data
  • 18bed bedMethyl
  • 18bigBed bedMethyl
  • 4fastq
Organism
  • 20Homo sapiens
Biosample type
  • 10primary cell
  • 10tissue
Organ
  • 6epithelium
  • 5musculature of body
  • 4kidney
  • 2brain
  • 2heart
  • 2liver
  • 2pancreas
  • 1connective tissue
  • 1eye
  • pericardium
  • 1vasculature
Project
  • 20AMP
Genome assembly (visualization)
  • 18hg19
Lab
  • 20AMP-T2D consortium
Audit category:
  • 2inconsistent ontology term
organ_slims!
  • pericardium
BIOSAMPLE
ASSAY

20 results

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RRBS
primary cell
cardiac fibroblast1
cardiac muscle cell1
choroid plexus epithelial cell1
epithelial cell of proximal tubule1
hepatocyte1
tissue
skeletal muscle tissue4
brain1
heart left ventricle1
islet of Langerhans1
kidney1
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