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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
424
ChIP-seq
113
total RNA-seq
29
ATAC-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
113
Transcription
Date released
78
February, 2021
22
August, 2021
5
January, 2019
4
March, 2020
4
May, 2021
4
October, 2019
1
November, 2019
Available data
113
tsv
104
bam
104
bigWig
5
fastq
Organism
118
Homo sapiens
Biosample type
1031
tissue
247
primary cell
136
in vitro differentiated cells
118
cell line
Organ
52
artery
52
blood vessel
52
heart
52
vasculature
34
epithelium
33
pancreas
16
liver
8
embryo
6
kidney
Project
116
AMP
2
T1D
Genome assembly (visualization)
104
GRCh38
104
hg19
Lab
104
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
37
inconsistent ontology term
month_released!
November, 2018
BIOSAMPLE
ASSAY
118 results
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total RNA-seq
STARR-seq
cell line
smooth muscle cell of the coronary artery
52
EndoC_BH1
33
HepG2
14
2
H1-hESC
8
HEK293T
2
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