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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1728
ChIP-seq
1502
total RNA-seq
531
ATAC-seq
368
single cell RNA-seq
203
DNase-seq
87
RNA microarray
84
snATAC-seq
68
WGBS
57
pCHi-C
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
68
DNA methylation
Date released
41
May, 2022
12
July, 2019
9
August, 2017
November, 2018
6
February, 2021
Available data
41
zippedFastqFolder
11
bam
10
bed bedMethyl
10
bigBed bedMethyl
10
bigWig
10
fastq
6
tsv
Organism
68
Homo sapiens
Biosample type
47
primary cell
21
tissue
Organ
47
epithelium
47
pancreas
8
heart
6
adipose tissue
6
connective tissue
4
liver
2
blood vessel
2
vasculature
1
limb
1
musculature of body
Project
47
HPAP
21
AMP
Genome assembly (visualization)
10
GRCh38
Lab
47
Klaus Kaestner, Upenn
21
AMP-T2D consortium
assay_title!
Hi-C
month_released!
February, 2020
November, 2018
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
68 results
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WGBS
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
heart left ventricle
4
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
aorta
2
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