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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1834
ChIP-seq
1527
total RNA-seq
525
ATAC-seq
369
single cell RNA-seq
209
DNase-seq
87
RNA microarray
84
snATAC-seq
73
WGBS
56
pCHi-C
32
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
GRO-seq
STARR-seq
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
73
DNA methylation
Date released
41
May, 2022
12
July, 2019
9
August, 2017
6
February, 2021
5
November, 2018
Available data
41
zippedFastqFolder
16
bam
15
bed bedMethyl
15
bigBed bedMethyl
15
bigWig
15
fastq
6
tsv
Organism
73
Homo sapiens
Biosample type
47
primary cell
25
tissue
1
cell line
Organ
51
pancreas
47
epithelium
8
heart
6
adipose tissue
6
connective tissue
5
liver
2
blood vessel
spleen
2
vasculature
1
limb
1
musculature of body
Project
47
HPAP
26
AMP
Genome assembly (visualization)
15
GRCh38
Lab
47
Klaus Kaestner, Upenn
26
AMP-T2D consortium
assay_title!
STARR-seq
lab.title!
Struan F.A. Grant, CHOP
organ_slims!
spleen
vein
BIOSAMPLE
ASSAY
73 results
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WGBS
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
heart left ventricle
4
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
aorta
2
+ See 7 more…
cell line
HepG2
1
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