Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1466
total RNA-seq
1316
ChIP-seq
485
ATAC-seq
363
single cell RNA-seq
203
DNase-seq
87
RNA microarray
84
snATAC-seq
73
WGBS
pCHi-C
29
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
73
DNA methylation
Date released
41
May, 2022
10
July, 2019
9
August, 2017
7
November, 2018
6
February, 2021
Available data
41
zippedFastqFolder
17
fastq
16
bam
16
bed bedMethyl
16
bigBed bedMethyl
16
bigWig
6
tsv
Organism
73
Homo sapiens
Biosample type
47
primary cell
25
tissue
1
cell line
Organ
51
pancreas
47
epithelium
8
heart
6
adipose tissue
6
connective tissue
5
liver
blood vessel
2
spleen
2
vasculature
1
limb
1
musculature of body
Project
47
HPAP
26
AMP
Genome assembly (visualization)
16
GRCh38
Lab
47
Klaus Kaestner, Upenn
26
AMP-T2D consortium
assay_title!
pCHi-C
organ_slims!
blood vessel
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
73 results
search-icon
table-tab-icon
Clear Filters
WGBS
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
heart left ventricle
4
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
body of pancreas
2
+ See 7 more…
cell line
HepG2
1
See all biosamples
Download