Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
964
ChIP-seq
404
total RNA-seq
222
ATAC-seq
single cell RNA-seq
34
DNase-seq
32
pCHi-C
15
Hi-C
10
RRBS
8
snATAC-seq
6
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
small RNA-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
FAIRE-seq
1
MPRA
1
WGBS
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
1
DNA methylation
Date released
1
November, 2018
Available data
1
bam
1
bed bedMethyl
1
bigBed bedMethyl
1
bigWig
1
fastq
Organism
1
Homo sapiens
Biosample type
tissue
1
cell line
Organ
1
liver
Project
1
AMP
Genome assembly (visualization)
1
GRCh38
Lab
Klaus Kaestner, Upenn
1
AMP-T2D consortium
assay_title!
shRNA RNA-seq
single cell RNA-seq
biosample_type!
tissue
lab.title!
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
1 results
search-icon
table-tab-icon
Clear Filters
WGBS
cell line
HepG2
1
Download