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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1673
ChIP-seq
1391
total RNA-seq
ATAC-seq
367
single cell RNA-seq
211
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
52
pCHi-C
30
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
367
Transcription
75
DNA methylation
Target of assay
3
control
Date released
106
August, 2021
75
May, 2022
49
April, 2018
48
July, 2018
47
September, 2023
40
September, 2020
24
February, 2021
15
July, 2019
9
April, 2020
9
August, 2017
8
November, 2018
3
August, 2018
3
June, 2018
3
May, 2023
1
December, 2019
1
February, 2023
1
September, 2018
Available data
215
tsv
151
fastq
124
bam
123
bigWig
93
zippedFastqFolder
17
bed bedMethyl
17
bigBed bedMethyl
13
txt
8
csv
Organism
442
Homo sapiens
Biosample type
234
primary cell
207
tissue
in vitro differentiated cells
1
cell line
Organ
131
pancreas
117
epithelium
101
heart
64
kidney
10
connective tissue
9
lung
8
blood vessel
8
vasculature
6
adipose tissue
6
liver
3
brain
2
artery
2
musculature of body
2
spleen
1
limb
Project
254
AMP
132
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
123
GRCh38
106
hg19
Lab
243
AMP-T2D consortium
132
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
7
inconsistent ontology term
5
audit script error
assay_title!
ATAC-seq
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
442 results
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single cell RNA-seq
WGBS
primary cell
Langerhans cell
85
pancreatic alpha cell
12
31
pancreatic beta cell
12
16
pancreatic acinar cell
12
pancreatic delta cell
11
+ See 14 more…
tissue
kidney
64
heart left ventricle
18
4
heart right ventricle
17
2
right cardiac atrium
18
1
left cardiac atrium
18
+ See 21 more…
cell line
HepG2
1
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