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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
953
ChIP-seq
439
total RNA-seq
263
ATAC-seq
187
single cell RNA-seq
48
WGBS
32
pCHi-C
31
DNase-seq
29
snATAC-seq
14
Hi-C
9
RRBS
6
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
small RNA-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
FAIRE-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
48
DNA methylation
2
Transcription
Date released
41
May, 2022
6
February, 2021
2
July, 2019
1
November, 2018
Available data
41
zippedFastqFolder
8
tsv
7
fastq
3
bam
3
bigWig
1
bed bedMethyl
1
bigBed bedMethyl
Organism
50
Homo sapiens
Biosample type
49
primary cell
tissue
1
cell line
Organ
47
epithelium
47
pancreas
1
adipose tissue
1
connective tissue
1
liver
1
musculature of body
Project
47
HPAP
3
AMP
Genome assembly (visualization)
3
GRCh38
2
hg19
Lab
47
Klaus Kaestner, Upenn
3
AMP-T2D consortium
audit.ERROR.category!
audit script error
biosample_type!
tissue
organ_slims!
heart
BIOSAMPLE
ASSAY
50 results
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Clear Filters
WGBS
small RNA-seq
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
mesenchymal stem cell of adipose
1
skeletal muscle satellite cell
1
cell line
HepG2
1
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