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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1731
ChIP-seq
1521
total RNA-seq
528
ATAC-seq
368
single cell RNA-seq
87
RNA microarray
83
snATAC-seq
74
WGBS
56
pCHi-C
28
Hi-C
16
RRBS
16
small RNA-seq
10
MeRIP-seq
6
DNase-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
74
DNA methylation
16
Transcription
Date released
41
May, 2022
27
July, 2019
9
August, 2017
7
November, 2018
6
February, 2021
Available data
41
zippedFastqFolder
33
bam
32
bigWig
22
tsv
17
fastq
16
bed bedMethyl
16
bigBed bedMethyl
Organism
90
Homo sapiens
Biosample type
48
primary cell
41
tissue
1
cell line
Organ
53
pancreas
47
epithelium
9
adipose tissue
9
connective tissue
9
heart
8
liver
4
brain
musculature of body
2
blood vessel
2
spleen
2
vasculature
1
kidney
1
limb
Project
47
HPAP
43
AMP
Genome assembly (visualization)
32
GRCh38
16
hg19
Lab
47
Klaus Kaestner, Upenn
43
AMP-T2D consortium
files.file_type!
bed broadPeak
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
90 results
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WGBS
small RNA-seq
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
mesenchymal stem cell of adipose
1
tissue
body of pancreas
2
2
heart left ventricle
4
liver
3
1
adipose tissue
3
right lobe of liver
1
2
+ See 16 more…
cell line
HepG2
1
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