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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1797
ChIP-seq
1527
total RNA-seq
531
ATAC-seq
368
single cell RNA-seq
203
DNase-seq
87
RNA microarray
84
snATAC-seq
68
WGBS
56
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
68
DNA methylation
18
Transcription
Date released
41
May, 2022
30
July, 2019
9
August, 2017
November, 2018
6
February, 2021
Available data
41
zippedFastqFolder
29
bam
28
bigWig
24
tsv
10
bed bedMethyl
10
bigBed bedMethyl
10
fastq
Organism
86
Homo sapiens
Biosample type
49
primary cell
37
tissue
Organ
49
pancreas
47
epithelium
9
adipose tissue
9
connective tissue
9
heart
7
liver
4
brain
3
musculature of body
2
blood vessel
2
vasculature
1
kidney
1
limb
Project
47
HPAP
39
AMP
Genome assembly (visualization)
28
GRCh38
18
hg19
Lab
47
Klaus Kaestner, Upenn
39
AMP-T2D consortium
month_released!
November, 2018
organ_slims!
ovary
BIOSAMPLE
ASSAY
86 results
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WGBS
small RNA-seq
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
mesenchymal stem cell of adipose
1
skeletal muscle satellite cell
1
tissue
heart left ventricle
4
liver
3
1
adipose tissue
3
right lobe of liver
1
2
subcutaneous abdominal adipose tissue
3
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