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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1548
ChIP-seq
1153
total RNA-seq
310
ATAC-seq
182
single cell RNA-seq
181
DNase-seq
87
RNA microarray
39
pCHi-C
28
WGBS
28
snATAC-seq
24
Hi-C
16
small RNA-seq
11
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
28
DNA accessibility
28
DNA methylation
Date released
12
July, 2019
10
April, 2020
9
August, 2017
8
January, 2021
7
November, 2018
6
August, 2021
3
February, 2021
2
February, 2023
1
August, 2022
1
May, 2022
Available data
18
bam
17
bed bedMethyl
17
bigBed bedMethyl
17
bigWig
11
fastq
3
tsv
1
bed bed3+
1
txt
Organism
58
Homo sapiens
Biosample type
primary cell
58
tissue
1
cell line
Organ
15
pancreas
10
lung
9
kidney
8
heart
6
adipose tissue
6
connective tissue
5
liver
2
blood vessel
2
musculature of body
2
spleen
2
vasculature
1
limb
Project
39
AMP
10
LungMap
10
T1D
Genome assembly (visualization)
17
GRCh38
1
hg19
Lab
33
AMP-T2D consortium
10
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
Audit category:
2
audit script error
biosample_type!
primary cell
month_released!
May, 2021
BIOSAMPLE
ASSAY
59 results
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WGBS
snATAC-seq
snDrop-seq
tissue
lung
10
islet of Langerhans
7
kidney
6
pancreas
2
4
heart left ventricle
4
+ See 15 more…
cell line
HepG2
1
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