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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
605
ChIP-seq
286
ATAC-seq
263
single cell RNA-seq
243
total RNA-seq
87
RNA microarray
66
snATAC-seq
58
WGBS
40
pCHi-C
32
Hi-C
21
RRBS
10
MeRIP-seq
5
DNase-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
snDrop-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
66
DNA accessibility
58
DNA methylation
Date released
63
May, 2022
33
February, 2021
10
April, 2020
7
August, 2017
6
August, 2021
4
July, 2019
1
August, 2022
Available data
62
zippedFastqFolder
35
fastq
6
tsv
1
bam
1
bed bed3+
1
txt
Organism
123
Homo sapiens
Biosample type
95
primary cell
29
tissue
Organ
48
pancreas
47
epithelium
10
lung
6
kidney
4
adipose tissue
4
connective tissue
4
liver
2
heart
1
blood vessel
1
musculature of body
1
vasculature
Project
95
HPAP
19
AMP
T1D
10
LungMap
Genome assembly (visualization)
GRCh38
1
hg19
Lab
95
Klaus Kaestner, Upenn
13
AMP-T2D consortium
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
Audit category:
29
audit script error
assembly!
GRCh38
award.project!
T1D
BIOSAMPLE
ASSAY
124 results
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snATAC-seq
WGBS
primary cell
Langerhans cell
48
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
lung
10
kidney
6
liver
3
subcutaneous abdominal adipose tissue
3
heart left ventricle
2
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