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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1843
ChIP-seq
1435
total RNA-seq
482
ATAC-seq
284
single cell RNA-seq
212
DNase-seq
87
RNA microarray
57
pCHi-C
36
snATAC-seq
30
Hi-C
28
WGBS
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
36
DNA accessibility
28
DNA methylation
Date released
16
January, 2021
12
July, 2019
10
April, 2020
9
August, 2017
7
November, 2018
6
August, 2021
2
February, 2023
1
August, 2022
1
May, 2022
Available data
18
bam
17
bed bedMethyl
17
bigBed bedMethyl
17
bigWig
11
fastq
1
bed bed3+
1
txt
Organism
63
Homo sapiens
Biosample type
55
tissue
8
primary cell
1
cell line
Organ
15
pancreas
10
lung
8
blood
8
bodily fluid
8
heart
6
adipose tissue
6
connective tissue
6
kidney
5
liver
2
blood vessel
2
musculature of body
2
spleen
2
vasculature
1
limb
Project
HPAP
36
AMP
18
T1D
10
LungMap
Genome assembly (visualization)
17
GRCh38
1
hg19
Lab
30
AMP-T2D consortium
18
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
Audit category:
2
audit script error
audit.ERROR.category!
inconsistent control
award.project!
HPAP
files.file_type!
bedpe
BIOSAMPLE
ASSAY
64 results
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snATAC-seq
WGBS
tissue
lung
10
islet of Langerhans
7
kidney
6
pancreas
4
2
heart left ventricle
4
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primary cell
peripheral blood mononuclear cell
8
cell line
HepG2
1
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