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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1766
ChIP-seq
1466
total RNA-seq
483
ATAC-seq
363
single cell RNA-seq
201
DNase-seq
87
RNA microarray
84
snATAC-seq
73
WGBS
52
pCHi-C
29
Hi-C
20
RRBS
18
small RNA-seq
10
MeRIP-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
4
GRO-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
84
DNA accessibility
73
DNA methylation
Date released
63
May, 2022
33
February, 2021
16
January, 2021
10
April, 2020
10
July, 2019
9
August, 2017
7
November, 2018
6
August, 2021
2
February, 2023
1
August, 2022
Available data
62
zippedFastqFolder
44
fastq
16
bam
16
bed bedMethyl
16
bigBed bedMethyl
16
bigWig
6
tsv
1
bed bed3+
1
txt
Organism
156
Homo sapiens
Biosample type
103
primary cell
53
tissue
1
cell line
Organ
62
pancreas
47
epithelium
10
lung
8
blood
8
bodily fluid
8
heart
6
adipose tissue
6
connective tissue
6
kidney
5
liver
2
blood vessel
2
musculature of body
2
spleen
vasculature
1
limb
Project
95
HPAP
34
AMP
18
T1D
10
LungMap
Genome assembly (visualization)
16
GRCh38
1
hg19
Lab
95
Klaus Kaestner, Upenn
28
AMP-T2D consortium
18
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
Audit category:
29
audit script error
biosample_type!
stem cell
lab.title!
Mark McCarthy, Oxford
organ_slims!
vasculature
BIOSAMPLE
ASSAY
157 results
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snATAC-seq
WGBS
primary cell
Langerhans cell
48
pancreatic alpha cell
31
pancreatic beta cell
16
peripheral blood mononuclear cell
8
tissue
lung
10
islet of Langerhans
7
kidney
6
pancreas
4
2
heart left ventricle
4
+ See 11 more…
cell line
HepG2
1
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