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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1106
total RNA-seq
914
ChIP-seq
448
ATAC-seq
234
single cell RNA-seq
197
DNase-seq
87
RNA microarray
57
snATAC-seq
55
WGBS
53
pCHi-C
30
Hi-C
16
RRBS
15
small RNA-seq
10
MeRIP-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
STARR-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
57
DNA accessibility
55
DNA methylation
Date released
63
May, 2022
16
January, 2021
11
July, 2019
10
April, 2020
6
August, 2021
3
August, 2017
2
February, 2023
1
August, 2022
Available data
62
zippedFastqFolder
fastq
17
bam
16
bed bedMethyl
16
bigBed bedMethyl
16
bigWig
6
tsv
1
bed bed3+
1
txt
Organism
111
Homo sapiens
Biosample type
70
primary cell
42
tissue
Organ
52
pancreas
41
epithelium
10
lung
8
blood
8
bodily fluid
8
heart
6
kidney
3
adipose tissue
3
connective tissue
liver
2
blood vessel
2
musculature of body
2
vasculature
1
limb
Project
62
HPAP
22
AMP
18
T1D
10
LungMap
Genome assembly (visualization)
8
GRCh38
1
hg19
Lab
62
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
16
AMP-T2D consortium
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
Audit category:
2
audit script error
files.file_type!
fastq
organ_slims!
liver
BIOSAMPLE
ASSAY
112 results
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snATAC-seq
WGBS
primary cell
pancreatic alpha cell
25
Langerhans cell
21
pancreatic beta cell
16
peripheral blood mononuclear cell
8
tissue
lung
10
islet of Langerhans
7
kidney
6
heart left ventricle
4
pancreas
4
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