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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
286
total RNA-seq
212
ChIP-seq
187
ATAC-seq
152
single cell RNA-seq
82
snATAC-seq
47
WGBS
17
pCHi-C
10
MeRIP-seq
8
Hi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
82
DNA accessibility
47
DNA methylation
Date released
62
May, 2022
33
February, 2021
16
January, 2021
10
April, 2020
6
August, 2021
2
February, 2023
Available data
62
zippedFastqFolder
33
fastq
6
tsv
Organism
128
Homo sapiens
Biosample type
103
primary cell
26
tissue
Organ
57
pancreas
47
epithelium
10
lung
8
blood
8
bodily fluid
6
kidney
Project
95
HPAP
18
T1D
10
LungMap
6
AMP
Lab
95
Klaus Kaestner, Upenn
AMP-T2D consortium
18
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
Audit category:
27
audit script error
files.file_type!
hdf5
lab.title!
AMP-T2D consortium
month_released!
October, 2017
BIOSAMPLE
ASSAY
129 results
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snATAC-seq
WGBS
primary cell
Langerhans cell
48
pancreatic alpha cell
31
pancreatic beta cell
16
peripheral blood mononuclear cell
8
tissue
lung
10
islet of Langerhans
6
kidney
6
pancreas
4
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